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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18859329, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRVCWIMAL SWFWMVSTGL VSAEEEVLMN TKLETSDLRW TIYPSGDPEW EEMSGLDEEG  60
   61 NSVRTFQVCP MDSSVSHWLR TRFIPRHGAS QVYVEIRFTM MECSAMPASF RTCKETFNLY 120
  121 YYQSDEDTAS ATHPAWMENP YSKVDTVAAD FLLRRGGERK SNVKTVRVGP LSLFGFYLAF 180
  181 QTQGACMALL SVRVFFKKCP AVSRAFSSFP ETLPHSLVQQ AEGVCVDNSA PTGQCTAPPT 240
  241 MFCGEDGQWV GPPSSTCACK PGYEPVDSDR CRACGLGQYK ASVGGSLCRV CPDNSNTHSA 300
  301 GSSLCVCRPG YHRATSDLPD SACTKPPSAP RSIIYQINDT VVTLEWSEPL DRGGRSDLSY 360
  361 SVECMHCRGS LCVQCADSIT YRPGQMGVSG RRVIIRGLLP HTTYTFTVLA QNGVSAVSHT 420
  421 SPASSSVNIT TSRDVAVPVS GIRRIKASES SVSISWTVPP QTQHSIQDYQ LRYSLKGQDD 480
  481 GWQYVSSRSS SVVLNDLSRA SQYQVQVRAR TAAGYGHFSS AVSISTLPDD EESPSRLMLT 540
  541 GVLVAIGLLI LIAVVIVAVF CFRRSTRRRD PDPDKSGQFL MGQGIKVYID PFTYEDPNEA 600
  601 VREFAKEIDV SFVKIEEVIG AGEFGEVCRG RLKVPGKKEN YVAIKTLKGG YTDKQRRDFL 660
  661 SEASIMGQFQ HPNIIHLEGV ITASCPVMIL TEYMENGALD SFLRLNDGQF TPIQLVGMLR 720
  721 GIASGMKYLS EMSFVHRDLA ARNILVNSNL VCKVSDFGLS RFLTENSSDP TYTSSLGGKI 780
  781 PIRWTAPEAI AFRKFTSASD VWSYGIVMWE VMSFGERPYW DMSNQDVINA IEQDYRLPPP 840
  841 PECPASLHQL MLDCWQKERS SRPRFCAIVS ALDRLIRNPA SLKITGRIPD GPSHPLLDQR 900
  901 APPPLSHCSS VADWLRAIKM ERYEDAFMQA GFTAIQHITH ISTEDLLRIG VTLAGHQKKI 960
  961 LSSVQTLRIH GGSLRY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle