YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4587298, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKITVMDKI KLTAPSKSTQ KLILVTFMLI SLVCIFYVYY NPNTTFFKYP TMGIHANSSC  60
   61 SETCLHVLKM QNYECIMKNA SYNALPTPAP NPAKGDQDII VLIWMAPFRV PFDLKDCGLE 120
  121 YNIHGCQLTY DRSLIQKAHG VMFHHRDMST DFPQPPRPDF QKWIWWNMES PTHCNQNDFL 180
  181 NDRFNVTSSY NRDSDIPVPY GRLVDATEEQ KKFTIPKKDK LVCWIVSNFQ GHHKRTHFFY 240
  241 EFAKHINVST YGGHFNNRIN GDDYGNVVSS CKFYLSFENS IHRDYFTEKL FNPLALGTVP 300
  301 VVIGPPRYNY EEFIPRDAFI HVDDFPTPKE LADHLISLDQ NEEQYKQFFN WRKLYVSKST 360
  361 SFGLEHSCRI CDYLKRNKHY IAVTDLKGWF WG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	392	0.98