YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKITLTPPS KAAQKVIIAT FMLISFVCIF FVYYNPNTTF FKFPAVDVHT NCSCTETCLD  60
   61 VLKKQNYKCT IKNASDNPST TPAPNPAPAT AKKDDQETIL LIWVYPFGAR FDLGVCGSQF 120
  121 NIHGCHLTDD RSMIQKAHGV MFHHRDLSAD LPQPPRPAFQ KWIWWNMESP SNSHPNSLIN 180
  181 DGFNLTSSFR KDSDIPVPYG RLIDATDEQK NFTIPKKDKL VCWIVSNFQE HHKRSQYYNE 240
  241 LVKHIKVEAY GGHFNNRVND DDYGNVVSSC KFYLSFENSI HRDYFTEKLF NPLALGTVPV 300
  301 VLGPSRDNYE EFIPRDAFIH VDDFPTPKEL ADHLKSLDQN EEQYRQYFNW RKHFISMSSS 360
  361 FGLEHACRTC DYLKRNKHYI AIKDLKGWFW G

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	34	0.97
Non-Cytoplasmic	35	391	0.98