YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSCRLLCG FLMSFVGWIG IIIATSTNDW VLSCTYGSHS CRNMDDLETK GLWTECVIST  60
   61 ALYHCIPLNQ VRRIPAYIQA CRVLMVSASL LGLPALALLL LAMPCVKVSQ ETEGTKHRRA 120
  121 VQGGLIILVI SLCGMVSTVW FPIGKLDGLM SFGFSLYAGW VGSALCFFAG SVMVCCSKDH 180
  181 SPSENPESRH YYSNPDGVAS TGPSENPETR YYYSNHDGVT SSGTSENQET RFYYSNHDGV 240
  241 TSYGPAKNSH AKSEHV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.94
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	82	0.95
Transmembrane Helix	83	103	0.90
Cytoplasmic	104	120	0.85
Transmembrane Helix	121	143	0.91
Non-Cytoplasmic	144	155	0.77
Transmembrane Helix	156	176	0.92
Cytoplasmic	177	256	0.98