YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTALEVTGY FMCLIGWVLT GLAVANDYWK ISSIQGNVIV SNRLYENLWH ACGEDSTGKA  60
   61 NCQDFQSMLA LPVHIQACRA LVIIALLLGL VGLVLSTMGL NCIKIGSKTE ESKGKNMFIG 120
  121 GIIYLIGGLC TMVGVSWYAA RVVQEFNDPF YGGVRFELGS GLYIGWAGAA LCMLGGGFQC 180
  181 SAYQRFSKSK EKGAYYPAGK PQTIYTTAQS NAETSKAYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	76	0.95
Transmembrane Helix	77	100	0.88
Cytoplasmic	101	117	0.88
Transmembrane Helix	118	140	0.93
Non-Cytoplasmic	141	161	0.91
Transmembrane Helix	162	182	0.94
Cytoplasmic	183	219	0.98