YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15553379, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHAGLQMLG YCLGFLGLLG LIASTAMAEW KMSSYAGDNI ITAQAQYEGL WQSCVSQSTG  60
   61 QLQCKKYDSL LKLPGEIQGA RGLMLTGIFL CGLSTLVSFV GMKCTTCLSE APQVKSKVAL 120
  121 AGGVLFITGG LFALIATSWY GEKIRQKFFD PFTPTNARYE FGKALYVGWG SSALSIIGGS 180
  181 LLCCICGSEA SEKPSYPPAR AAGRPGTDRV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	28	0.82
Non-Cytoplasmic	29	82	0.92
Transmembrane Helix	83	102	0.93
Cytoplasmic	103	117	0.82
Transmembrane Helix	118	140	0.91
Non-Cytoplasmic	141	164	0.92
Transmembrane Helix	165	187	0.82
Cytoplasmic	188	210	0.87