YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190337504, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQVLGITL SMIGFAGTII ICALPMWKVT AFIGTNIVVA QVFWEGLWMT CVYERIGQMQ  60
   61 CKLYDALLDL DPFLQASRGL IVTTMALASL AFLIFLIGAD CTNCLSNPRA KGRIVVVSGI 120
  121 TFMLSGLTTV VPVSWTADSI IRDFHNPVVH EALKREMGAA LYVGWLTAGF LFVGGAILCT 180
  181 SCPPERDNYL PRYTLTKSGT HSGYAVKNYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	29	0.85
Non-Cytoplasmic	30	79	0.80
Transmembrane Helix	80	99	0.93
Cytoplasmic	100	113	0.76
Transmembrane Helix	114	136	0.90
Non-Cytoplasmic	137	158	0.89
Transmembrane Helix	159	182	0.88
Cytoplasmic	183	210	0.92