YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20373151, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMGLEIGGI ALGIIGWIIS IVACALPMWR VSAFVGANIV TAQVIWEGLW MNCVVQSTGQ  60
   61 MQCKVYDSML ALGQDLQASR AMTVIAIILA VLGVMISVMG AKCTNCIEDE GAKAKVMIVS 120
  121 GIMFIIAGIL DLIPSAWVAN QIIRDFYNPL LPGAQQRELG ASIYIGFAAA ALLIIGGAML 180
  181 CCTCPPKEKK YKPARMGYSA PRSASAGYDK KDYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	29	0.89
Non-Cytoplasmic	30	80	0.84
Transmembrane Helix	81	101	0.92
Cytoplasmic	102	115	0.85
Transmembrane Helix	116	138	0.89
Non-Cytoplasmic	139	160	0.93
Transmembrane Helix	161	184	0.91
Cytoplasmic	185	214	0.98