YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858439, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRIAKEVAG QTLCFIGFVG ICICCGIPMW RVTTYIGANI VTGQIVWDGL WMNCVMQSTG  60
   61 QMQCKIQDSI MNLTQDLQVA RALVIISILI GFMGMLLTFI GGQCSSCLKN ESSMAKVLIL 120
  121 GGILCIVAGV LLLIPVCWSA AYTISDYVSV TTIQTQKREL GASIYVGWGA SAFLLFGGII 180
  181 LCTSCPPREN IYPQYPGMYP YQGPVYGHQY APSAVYSGIN KPYHPPVAYT PAPRQYL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	78	0.93
Transmembrane Helix	79	101	0.91
Cytoplasmic	102	116	0.83
Transmembrane Helix	117	142	0.88
Non-Cytoplasmic	143	163	0.87
Transmembrane Helix	164	183	0.93
Cytoplasmic	184	237	0.92