YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859443, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDRTQELRS AKDSDDDEEV VHVDRDHFMD EFFEQVEEIR GCIEKLSEDV EQVKKQHSAI  60
   61 LAAPNPDEKT KQELEDLTAD IKKTANKVRS KLKAIEQSIE QEEGLNRSSA DLRIRKTQHS 120
  121 TLSRKFVEVM TEYNTTQSKY RDRCKDRIQR QLEITGRTTT NEELEDMLES GKLAIFTDDI 180
  181 KMDSQMTKQA LNEIETRHTE IIKLENSIRE LHDMFVDMAM LVESQGEMID RIEYNVEHSV 240
  241 DYVERAVSDT KKAVKYQSQA RKKKIMIIIC CVILGVVLRS SIGGTLGF

Type	Start	End	Confidence
Cytoplasmic	1	264	0.93
Transmembrane Helix	265	283	0.93
Non-Cytoplasmic	284	288	0.66