YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41107656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFGLELVG VTLSVLGWIL NIVCCALPMW RVTAFIGTNI VTAQVYWEGI WMSCVVQSTG  60
   61 QMQCKVYDSM LALPADLQAA RALVVVAIIV GVLALFVAIV GAKCTNCIEE EAAKARVMIS 120
  121 SGAAFITASV LQLIPVCWSA HTVILEFYSP LVPEAQKMEI GASLYLGWAA SAMLLVGGSI 180
  181 LCCSCPPKDE TRYPPQSRIA YSAHHSVAPS TYNKRDYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.80
Transmembrane Helix	8	30	0.86
Non-Cytoplasmic	31	78	0.84
Transmembrane Helix	79	102	0.91
Cytoplasmic	103	120	0.84
Transmembrane Helix	121	142	0.90
Non-Cytoplasmic	143	163	0.88
Transmembrane Helix	164	185	0.90
Cytoplasmic	186	218	0.97