YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15553359, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTGLQMLG IALAIFGWIG VIVLCALPMW KVTAFIGANI VTSQTSWEGI WMSCVVQSTG  60
   61 QMQCKVYDSM LALSSDIQAA RALTVISIVI GVMGIMLSMA GGKCTNCIEE ESSKAKVGIT 120
  121 AGVIFIISGV LCLVPVCWTA NAIIQDFYNP LVVQAQKREI GASLYIGWGA SALLIIGGSL 180
  181 LCCHCPEKSD SGKYTAKYNA TPRSEASAPS GKNFV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	78	0.90
Transmembrane Helix	79	101	0.90
Cytoplasmic	102	117	0.90
Transmembrane Helix	118	142	0.89
Non-Cytoplasmic	143	163	0.89
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	215	0.94