YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUCR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNLSCENW LALENILKKY YLSAFYGIEF IVGMLGNFTV VFGYLFCMKN WNSSNVYLFN  60
   61 LSISDLAFLC TLPMLIRSYA TGNWTYGDVL CISNRYVLHA NLYTSILFLT FISIDRYLLM 120
  121 KFPFREHILQ KKEFAILISL AVWVLVTLEV LPMLTFITST PIEKGDSCVD YASSGNPKYS 180
  181 LIYSLCLTLL GFLIPLSVMC FFYYKMVVFL KKRSQQQATV LSLNKPLRLV VLAVVIFSVL 240
  241 FTPYHIMRNV RIASRLDSWP QGCSQKAIKC LYILTRPLAF LNSAVNPIFY FLVGDHFRDM 300
  301 LFSKLRQYFK SLTSFRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.90
Transmembrane Helix	25	47	0.90
Cytoplasmic	48	55	0.87
Transmembrane Helix	56	76	0.91
Non-Cytoplasmic	77	96	0.87
Transmembrane Helix	97	119	0.86
Cytoplasmic	120	133	0.95
Transmembrane Helix	134	156	0.89
Non-Cytoplasmic	157	180	0.94
Transmembrane Helix	181	204	0.93
Cytoplasmic	205	225	0.90
Transmembrane Helix	226	247	0.90
Non-Cytoplasmic	248	317	0.75