YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GGT6_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATTGAVLY QKLQLWEPGM ESEEEEEEEE IAEPLVLSLR RLQNTPGNKV GGLPGAWTRL  60
   61 LAGLLLLAVS SSLALRQLQG RNSPKGNLGP VDLPASRHSH HPGVYHHSAV ISPAATCSRL 120
  121 GQELLVAGGN VVDAGVGAAL CLAVVHPHAT GLGATFWGLF YNSSSGNSTA LTAGPAQILA 180
  181 PGLGLPTALP ALHLLHTHFG RLPWSHLLAK PAMLAQKGFE VDAPLASALA AQGTEGLCPL 240
  241 FCHTNGTPLG LGAQVTNPNL AAVLLREALA SSPDLVGNAL LNLLVRDLGL ELPSVQPKPS 300
  301 LEPALQLLLP QGVLFTTPGP SAGPELMGLL ESTLHSKTPS PASCSSLLQT AETPVSSALA 360
  361 TVDSHGSMLL LTSSLNSSFG SGHLSPSTGV LLSNLEASSV PSTWACPLIL RGNLDDTEDD 420
  421 MLGLVASGIP RGAKAMACTL FNHLTTPQTQ QQVQHQAQQR PTESPGICGK EALLQVVVHA 480
  481 EHAQVSSIPS GCCPFQGY

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.48
Transmembrane Helix	55	75	0.78
Cytoplasmic	76	128	0.52
Transmembrane Helix	129	150	0.64
Non-Cytoplasmic	151	175	0.65
Transmembrane Helix	176	196	0.69
Cytoplasmic	197	498	0.55