YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33325618, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFCEVVSCA IILLSLIIAL VGLVGNGTVF WLLGFQMRRN AFSVYILNLA GADFLFMCFQ  60
   61 IVYCSHIMLD MYYIPIKFPL FSIVVLNIGY LCGMSILSAI SIERCLSVMW PIWYRCQRPR 120
  121 HTSAVICTLL WVLALVWSLI EGKECGFLFD TNGPGWCETF DLIATAWLIV LIVVLLGSSL 180
  181 ALVINIFCGL YRIPVTRLYV TIVFTVLVFL LCGLPYGIYW FLLEWTEKFN YNLPCGFHPV 240
  241 TVLLSCVNSC ANPIIYFLVG SIRHHRFQRK TLKLLLQKAM QDTPEEEECG EMGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.87
Transmembrane Helix	10	33	0.92
Cytoplasmic	34	43	0.81
Transmembrane Helix	44	64	0.92
Non-Cytoplasmic	65	79	0.79
Transmembrane Helix	80	102	0.90
Cytoplasmic	103	120	0.92
Transmembrane Helix	121	140	0.95
Non-Cytoplasmic	141	162	0.94
Transmembrane Helix	163	188	0.90
Cytoplasmic	189	197	0.85
Transmembrane Helix	198	219	0.94
Non-Cytoplasmic	220	238	0.86
Transmembrane Helix	239	260	0.94
Cytoplasmic	261	294	0.97