YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGCE_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFWWWELG DPCAWTGKGR GTLKMSPATT GTFLLTVYTL FSKVHSDRNV YPSAGVLFVH  60
   61 VLEREYFKGE FPPYPKPGEV SNDPITFNTN LMGYPDRPGW LRYIQRTPYS DGVLYGSPTA 120
  121 ENVGKPTIIE ITAYNRRTFE TARHNLIINI MSAEEFPLPY QAEFFIKNMN VEEMLASEVL 180
  181 GDFLGAVKNV WQPERLNAIN ITSALDRGGR VPLPIKDMKE GVYVMVGADV AFSSCLREVE 240
  241 NPQNQLRCSQ EMEPVITCDK KFRTQFYIDW CKISLVDKTK QVSTYQEVVR GEGILPDGGE 300
  301 YKPPSDSLKS RDYYTDFLVT LAVPSAVALV LFLILAYIMC CRREGVEKRN MQTPDIQLVH 360
  361 HSSIQKSTKE LRDMSKNREI AWPLSTLPVF HPVTGEIIPP MHTDNYDSTN MPLMQTQPNL 420
  421 PHQTQIPQQQ TTGKWYP

Type	Start	End	Confidence
Non-Cytoplasmic	1	316	0.93
Transmembrane Helix	317	341	0.87
Cytoplasmic	342	437	0.89