YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNKI_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEEPPEAR RRCPEALGKA SGCCPEAPGK ARGCCPEALG KLLPGLCFLC CLVTYALVGA  60
   61 ALFSAVEGRP DPEAEENPEL KKFLDKLCNI LKCNLTVVEG SRKDLCEHLQ QLKPQWFKAP 120
  121 EDWSFLSALF FCCTVFSTVG YGHMYPVTRL GKFLCMLYAL FGIPLMFLVL TDIGDILAAI 180
  181 LSRAYSRFQA LLCLPRDISK WRPLLLCRKQ TDSKPADEAI PQIVIDAGAD ELLDPQPSRE 240
  241 PASPSCNVEL FERLVAREKQ NELQPPMRPV ERSNSCPELV LGRLSCSILS NLDEVGQQVE 300
  301 RLDIPLPVIA LVIFAYISCA AAILPFWETD LGFEDAFYFC FVTLTTIGFG DIVLVHPHFF 360
  361 LFFSIYIIVG MEILFIAFKL MQNRLLHTYK TLMLFVCQRE VSLPC

Type	Start	End	Confidence
Cytoplasmic	1	41	0.90
Transmembrane Helix	42	63	0.79
Non-Cytoplasmic	64	123	0.79
Transmembrane Helix	124	145	0.92
Cytoplasmic	146	153	0.69
Transmembrane Helix	154	179	0.82
Non-Cytoplasmic	180	305	0.72
Transmembrane Helix	306	327	0.93
Cytoplasmic	328	335	0.65
Transmembrane Helix	336	355	0.76
Non-Cytoplasmic	356	358	0.70
Transmembrane Helix	359	381	0.86
Cytoplasmic	382	405	0.91