YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LMBD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.95
Cytoplasmic	31	40	0.95
Transmembrane Helix	41	63	0.88
Non-Cytoplasmic	64	97	0.92
Transmembrane Helix	98	120	0.91
Cytoplasmic	121	139	0.92
Transmembrane Helix	140	160	0.94
Non-Cytoplasmic	161	186	0.96
Transmembrane Helix	187	212	0.83
Cytoplasmic	213	302	0.97
Transmembrane Helix	303	323	0.94
Non-Cytoplasmic	324	363	0.95
Transmembrane Helix	364	387	0.89
Cytoplasmic	388	405	0.88
Transmembrane Helix	406	426	0.95
Non-Cytoplasmic	427	488	0.96
Transmembrane Helix	489	510	0.92
Cytoplasmic	511	537	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAADLVI GWCIFGLLLL AILAFCWVYV RKYQSQRESE VVSTVTAIFS LAVALITSAL  60
   61 LPVDIFLVSY MKNQNGTFKD WANANVTVQI ENTVLYGYYT LYSVILFCVF FWIPFVYFYY 120
  121 EEKDDDDTSK CTQVKTALKY TLGFVVICAL LLLVGAFVPL NLPNNNNSTE WEKVKLLFED 180
  181 LGTGQGLAAL SFSISSLTLI GMLAAITYTA YGMSALPLNL IKGTRSTAYE RLENTEDIEE 240
  241 VEQHIQTIRS KSKDGRPLSA RDRRTLKQCE ERLRTLRKRE RHLEFIENSW WTKFCGALRP 300
  301 LKIIWGIFFI LVALLFVISL FLSNLDKALH SAGIDSGFIV FGTNLSNPLN MLLPLLQTVF 360
  361 PLDYILITII IMYFIFTSMA GIRNIGIWFF WIRLYKIRRG RTRPQALLFL CMILLLIVLH 420
  421 TSYMIYSLAP QYVMYGSQNY LIESNITSDA HKGNSTLAVP KRCDADAPKD QCTVTRTYVF 480
  481 LHKFWFFSAA YYFGNWAFLV VFLIGLIVSC CKGKKSVIEG VDEDSDLSDD EPSAYSA