YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACATN_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.98
Transmembrane Helix	75	98	0.88
Non-Cytoplasmic	99	109	0.89
Transmembrane Helix	110	134	0.79
Cytoplasmic	135	142	0.87
Transmembrane Helix	143	161	0.80
Non-Cytoplasmic	162	175	0.73
Transmembrane Helix	176	197	0.70
Cytoplasmic	198	210	0.61
Transmembrane Helix	211	235	0.58
Non-Cytoplasmic	236	259	0.78
Transmembrane Helix	260	278	0.93
Cytoplasmic	279	302	0.86
Transmembrane Helix	303	325	0.80
Non-Cytoplasmic	326	345	0.78
Transmembrane Helix	346	365	0.90
Cytoplasmic	366	379	0.72
Transmembrane Helix	380	399	0.85
Non-Cytoplasmic	400	408	0.78
Transmembrane Helix	409	431	0.86
Cytoplasmic	432	443	0.71
Transmembrane Helix	444	461	0.74
Non-Cytoplasmic	462	509	0.84
Transmembrane Helix	510	529	0.92
Cytoplasmic	530	550	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTISHKDN SRQRRSGMFG HALDMKSGPL PPGGWDDNHQ DSVGGEGDRE VLLGDVGPGD  60
   61 FPKAKRSYRA ELSSILLLLF LYVLQGIPLG LAGSIPLILQ SKNVSYTDQA FFSFVFWPFS 120
  121 LKLLWAPLVD AVYFKNFGRR KSWLVPTQYI LGIFMIYLST QVDRLLGNID GRTPDVVALT 180
  181 VTFFLFEFLA ATQDIAVDGW ALTMLSRENV GYASTCNSVG QTAGYFLGNV LFLALESADF 240
  241 CNKYLRFQPQ PRGIVTLSDF LFFWGTVFLI TTTLVALLKK ETREASVVKE ETQGITDTYK 300
  301 LLFSIIKMPA VLAFCLLILT SKIGFSAADA VTGLKLVEEG VPKEHLALLA VPMVPLQIIL 360
  361 PLLISKYTAG PQPLNIFYKA MPYRLLLGLE YALLVWWTPK VEHQGGFPIY YYIIVLLSYA 420
  421 LHQVTLYSMY VSIMAFNAKV SDPLIGGTYM TLLNTVSNLG GNWPSTVALW LVDPLTVKEC 480
  481 VGASNQNCRT PEAIELCKKL GGSCVTALDG YYVESIVCVL IGFGWWFFLG PKFKKLQDEG 540
  541 PSSWKCKRTN