YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCL1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLRRNAVI GLNLYCGGAS LGAGGGSPAG TRLAAEEAKA RREGGGEAAL LPGARVVARP  60
   61 PPVGAEDPDV TASAERRLLK SPGLLAVPPE EMAASAAAIM SPEEELDGCE PEVLSKRPAV 120
  121 LPLLERVSEA AKSSGADGSL PSTPPPPEEE DDELYRQSLE IISRYLREQA TGSKDAKPLG 180
  181 EAGAAGRRAL ETLRRVGDGV QRNHETAFQG MLRKLDIKNE DDVKSFSRVM THVFKDGVTN 240
  241 WGRIVTLISF GAFVAKHLKS INQESCIEPL AESITDVLVR TKRDWLVKQR GWDGFVEFFH 300
  301 VQDLEGGIRN VLLAFAGVAG VGAGLAYLIR

Type	Start	End	Confidence
Signal Peptide	1	22	0.67
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	306	0.89
Transmembrane Helix	307	329	0.78
Cytoplasmic	330	330	0.79