YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APLD1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKWTAWEPQ GADALRRFQG LLLDRRGRLH CQVLRLREVA RRLERLRRRS LAANVAGSSL  60
   61 SAAGALAAIV GLSLSPVTLG ASLVASAVGL GVATAGGAVT ITSDLSLIFC NSREVRRVQE 120
  121 IAATCQDQMR ELLSCLEFFC QWQGRGDRQL LQSGRDASMA LYNSVYFIVF FGSRGFLIPR 180
  181 RAEGATKVSQ AVLKAKIQKL SESLESCTGA LDELSEQLES RVQLCTKAGR GHNLRNSPDL 240
  241 DAALFF

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	72	0.94
Non-Cytoplasmic	73	82	0.70
Transmembrane Helix	83	107	0.81
Cytoplasmic	108	246	0.77