YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47576707, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNNQTFVS EFLLLGLSGY PKTEIIYFVI ILVMYLVILT GNGVLIIASI FDPHLHTPMY  60
   61 FFLGNLSFLD ICYTTSSVPS TLVSQISKKR NVSFSGCAVQ MFVAFAMGST ECLLLGMMAF 120
  121 DRYVAICNPL RYSIIMSKEV YVSMASASWF SGGINSVVQT SLVMRLPFCG NNVINDFTCE 180
  181 VLAVLKLACA DISLNIVTIA ISNMAFLVLP LLLIFFSYVF ILYTILRMNS ATGRRKAFST 240
  241 CSAHLTVVGI FYGTLFIMYM KPKSQDLTGE DKFGISDKVI SLFYGLVTPM LNPIIYSLRN 300
  301 KDVKAAIKYI LKQKYIP

Type	Start	End	Confidence
Cytoplasmic	1	24	0.86
Transmembrane Helix	25	50	0.88
Non-Cytoplasmic	51	60	0.69
Transmembrane Helix	61	83	0.58
Cytoplasmic	84	95	0.49
Transmembrane Helix	96	120	0.78
Non-Cytoplasmic	121	203	0.54
Transmembrane Helix	204	226	0.89
Cytoplasmic	227	237	0.89
Transmembrane Helix	238	259	0.90
Non-Cytoplasmic	260	279	0.88
Transmembrane Helix	280	298	0.71
Cytoplasmic	299	317	0.74