YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47576319
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGNQSGDS EFLLLGLSEV PEHQRILFWT FLSMYLVTVV GNVLIILAIG SDSHLHTPMY  60
   61 FFLANLSFTD LFFVTNTIPK MLVNLQSQNK AISYPGCLTQ LFFLVSLVAL DNLILAVMAY 120
  121 DRYVAICRPL HYSTAMSPKL CILLLIFCWT LAILYGLIHT LLMTRVTFCG ARKIQYIFCE 180
  181 MYVLLRLACS DTYINHMVLI ATGCFIFLVP FGFMIMSYIW IVRAILRIPS ASNKYKAFST 240
  241 CASHLAVVAL FYGTLGMVYL RPLHTYSMKD SVATVMYAVV APMMNPFIYS LRNKDMHGAL 300
  301 GRLLKPLQKL T

Type	Start	End	Confidence
Cytoplasmic	1	26	0.84
Transmembrane Helix	27	50	0.90
Non-Cytoplasmic	51	58	0.68
Transmembrane Helix	59	78	0.70
Cytoplasmic	79	95	0.50
Transmembrane Helix	96	119	0.80
Non-Cytoplasmic	120	139	0.53
Transmembrane Helix	140	162	0.89
Cytoplasmic	163	173	0.48
Transmembrane Helix	174	190	0.52
Non-Cytoplasmic	191	197	0.73
Transmembrane Helix	198	222	0.90
Cytoplasmic	223	239	0.84
Transmembrane Helix	240	260	0.89
Non-Cytoplasmic	261	271	0.82
Transmembrane Helix	272	291	0.89
Cytoplasmic	292	311	0.91