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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50657362, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLWGLAWA FSFFASSLQK PRLLLFSPSV VNLGTPLSVG VQLLDAPAGQ EVKGSVYLRN  60
   61 PTSGPCSPKK DFKLSSGNDF VLLRLEVPLE DVRNCGLFDL RRAPHIQLVA YSPWLKNTAP 120
  121 KATETQGVNL LFSSRRGHIF VQTDQPIYNP GQRVRYRVFA LDQKMRPSTD TLTVTVENSH 180
  181 GLRVRKKVVF APTSIFTDDF VIPDISEPGT WKISARFSDG LESNRSTHFE VKKYVLPNFE 240
  241 VKLTPWKPYI LTVPSYREEI QLDIQARYVY GKPVQGVAYT RFALMDEQGK KTFLRGLETQ 300
  301 TKLVEGQTHI SISRDQFQAA LGKVNTEIGD LEGLRLYAAV AVIESPGGEM EEAELTSWPF 360
  361 VSSAFSLDLS HTKQHLVPGA PFLLQALVRE MSGSEASDVP VKVSATLLSG SDSKVLDFQQ 420
  421 NTNGIGQVSF SIHVPPTITE LRLLVSAGSL YPAVAKLTVQ APPSRGPGFL SIEPLDLRSP 480
  481 RVGDTFILNL RTVGIPVPTF SHYYYMIISR GQIMAMSREP RTTLTSISVL VDHHLAPSFY 540
  541 FVAYFYHQGL PVANSLLINV QPGDCEGKLE LKVDGAKEYR NGESMKLQLQ TDSEALVALG 600
  601 AVDTALYAVG GRSHKPLDMS KVFEVMNSYN LGCGPGGGDD ALQVFQTAGL AFSDGDRLTQ 660
  661 TKEDLSCPKE KISRQKRNVN FQKAISEKLG QYSSPDTKRC CQDGMTKLPM ARTCEQRAAR 720
  721 VPQPACREPF LSCCKFAEDL RRNQTRSQAG LARAQNVMQE EDLIDEDDIL VRSFFPENWL 780
  781 WKVEPVDRSK LLTVWLPDSL TTWEIHGVSL SKSKGLCVAK PTRVRVFREF HLHLRLPISV 840
  841 RRFEQLELRP VLYNYLSEDV TVSVHVSPVE GLCLAGGGLL AQQVSVPAGS ARPVAFSVVP 900
  901 TAAASMPLKV VARGSFDIGD AVSKILQIEK EGAIHREEIV YNLDPLNNLG RSLEIPGSSD 960
  961 PNVIPDGDFS SFVRVTASEP LETLGSEGAL SPGGVASLLK LPTGCAEQTM VLLAPTLTAS1020
 1021 RYLDRTEQWS KLPPETKDHA VDLIQKGHMR IQQFRKKDGS FGAWLDRDSS TWLTAFVLKI1080
 1081 LSLAQEQIGD SPEKLQETAG WLLGQQLDDG SFHDPCPVIQ RGMQGGLVGT DETVALTAFV1140
 1141 VIALHHGLAV FQDENSQQLK KRVEASIMKA NSFLGQKASA GLLGAHASAI TAYALTLTKA1200
 1201 SEDLRNVAHN SLMAMAEETG ENLYWGLAIG SQDNVVSSTA APRNPSEPVP QAPALWIETT1260
 1261 AYGLLHLLLR EGKGEMADKA ATWLTHQGSF QGGFRSTQDT VVALDALSAY WIASHTTEEK1320
 1321 ALNVTLSSMG RNGYKSHLLQ LNNHQVKGLE EELKFSLGST INVKVGGNSK GTLKILRTYN1380
 1381 VLDMKNTTCQ DLRIEVTITG YVEYTREANE DYEYDYDMPA ADDPSVHSQP VTPLQLFEGR1440
 1441 RSRRRREAPK AADEQESRVQ YTVCIWRNGN LGLSGMAIAD ITLLSGFQAL RADLEKLTSL1500
 1501 SDRYVSHFET DGPHVLLYFD SVPTTRECVG FGALQEVAVG LVQPASAVLY DYYSPDHKCS1560
 1561 VFYAGPTKSK LLSTLCSADV CQCAEGKCPR QRRSLERGVE DKDGYRMKFA CYYPRVEYGF1620
 1621 QVKVLREDSR SAFRLFETKI TQVLHFTKDA KASIGQTRNF LVRASCRLRL EPSKEYLIMG1680
 1681 MDGVTSDLKG DPQYLLDSNS WIEEMPSERL CRSTRQRAAC GQLNDFLQEY RSQGCQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle