YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BTLA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVPAMLVT PRSFREFFIL LLGLWSILCK EPTKRIGEEC RVQLKIKRNS SRSAWTGELF  60
   61 KIECPVTYCV HRPNVTWCKH NGTRCVPLEV GPQLHTSWVE NDQASAFVLY FEPIHLSDDG 120
  121 VYTCSANLNS EVINSHSVVI HVTERTQNCS EHPLITASDI PDATNASRPS TMEERPGRTW 180
  181 LLYALLPLGT SLLLLACVCL LCFLRRIQGK EKKPSDLAGR ERETNLVDIP VSSRTNSQIL 240
  241 TSETGIYDND PWSSRLGESE STISSQLEGN KQGIVYASLN HCVIGRTPRQ ASKIQEAPTE 300
  301 YASICVRS

Type	Start	End	Confidence
Signal Peptide	1	29	0.86
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	179	0.97
Transmembrane Helix	180	204	0.92
Cytoplasmic	205	308	0.96