YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49169818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPATLPPG VEDTTWTPGI NASWAPDEEE EDAMGSDGTG TAGMVTIQCI YALVCLVGLV  60
   61 GNALVIFVIL RYAKMKTATN IYLLNLAVAD ELFMLSVPFV ASAAALRHWP FGAVLCRAVL 120
  121 SVDGLNMFTS VFCLTVLSVD RYVAVVHPLR AATYRRPSVA KLINLGVWLA SLLVTLPIAV 180
  181 FADTRPARGG EAVACNLHWP HPAWSAVFVI YTFLLGFLLP VLAIGLCYLL IVGKMRAVAL 240
  241 RAGWQQRRRS EKKITRLVLM VVTVFVLCWM PFYVVQLLNL FVTSLDATVN HVSLILSYAN 300
  301 SCANPILYGF LSDNFRRSFQ RVLCLRCCLL ETTGGAEEEP LDYYATALKS RGGAGCICPP 360
  361 LPCQQEPVQA EPGCKQVPFT KTTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.93
Transmembrane Helix	49	70	0.95
Cytoplasmic	71	80	0.87
Transmembrane Helix	81	105	0.84
Non-Cytoplasmic	106	123	0.74
Transmembrane Helix	124	144	0.83
Cytoplasmic	145	161	0.86
Transmembrane Helix	162	181	0.94
Non-Cytoplasmic	182	207	0.93
Transmembrane Helix	208	232	0.95
Cytoplasmic	233	253	0.95
Transmembrane Helix	254	275	0.93
Non-Cytoplasmic	276	291	0.86
Transmembrane Helix	292	311	0.77
Cytoplasmic	312	385	0.81