YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCMC3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGSSDAER RQRWGRLFEE LDSNKDGRVD VHELRQGLAR LGRGDPDRAQ QGVSSDWDAD  60
   61 PDGGLSLEEF TRYLQEREQR LLLMFHSLDR NQDGHIDVSE IQQSFRALGI SISLEQAEKI 120
  121 LHSMDRDGTM TIDWQEWRDH FLLHSLENVE DVLYFWKHST VLDIGECLTV PDEFSQEEKL 180
  181 TGMWWKQLVA GAVAGAVSRT GTAPLDRLKV FMQVHASKSN RLNILGGLRN MIQEGGVLSL 240
  241 WRGNGINVLK IAPESAIKFM AYEQIKRAIR GQQETLHVQE RFVAGSLAGA TAQTIIYPME 300
  301 VLKTRLTLRR TGQYKGLLDC AKRILEREGP RAFYRGYLPN VLGIIPYAGI DLAVYETLKN 360
  361 RWLQQYSHES ANPGILVLLG CGTISSTCGQ IASYPLALVR TRMQAQASIE GGPQVSMVGL 420
  421 LRHILSQEGV WGLYRGIAPN FMKVIPAVSI SYVVYENMKQ ALGVTSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	374	0.66
Transmembrane Helix	375	394	0.71
Cytoplasmic	395	467	0.60