YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50872163, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLDAWTHI PHSVLLLILL LGFKGAAVRE LKVIQPVKSF FVGAGGSATL NCTVTSLLPV  60
   61 GPIRWYRGVG QSRLLIYPFT GEHSPRITNV SDVTKRNNMD FSIRISNVTP ADSGTYYCVK 120
  121 FQRGSSEPDI EIQSGGGTEL LVLAKPSSPM VSGPAARAVP QQTVTFTCRS HGFFPRNLTL 180
  181 KWFKNGDEIS HLETSVEPEE TSVSYRVSST VQVVLEPRDV RSQIICEVDH VTLDRAPLRG 240
  241 IAHISEFIQV PPTLEIRQQP TMVWNVINVT CQIQKFYPPS FQLTWLENGN ISRREVPFTL 300
  301 IVNKDGTYNW ISCLLVNISA LEENMVVTCK VEHDEQAEVI ETHTVLVTEH QRVKELKTAG 360
  361 IAKIPVAVLL GSKILLLIAA TVIYMHKKQN A

Type	Start	End	Confidence
Signal Peptide	1	27	0.62
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	391	0.80