YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AE_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	150	0.99
Transmembrane Helix	151	173	0.94
Cytoplasmic	174	183	0.83
Transmembrane Helix	184	205	0.92
Non-Cytoplasmic	206	216	0.90
Transmembrane Helix	217	234	0.91
Cytoplasmic	235	345	0.93
Transmembrane Helix	346	370	0.54
Non-Cytoplasmic	371	391	0.57
Transmembrane Helix	392	415	0.85
Cytoplasmic	416	419	0.51
Transmembrane Helix	420	442	0.82
Non-Cytoplasmic	443	461	0.59
Transmembrane Helix	462	484	0.86
Cytoplasmic	485	489	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLHPALPS CLLLVLFGIW RTAPQTHASS AGLPPLSATS FLEDLMDRYG KNDSLTLTQL  60
   61 KSLLDHLHVG VGRDNVSQPK EGPRNLSTCF SSGDLFAAHN LSERSQIGAS EFQEFCPTIL 120
  121 QQLDSQACTS ENQKSEENEQ TEEGKPSAIE VWGYGFLCVT VISLCSLMGA SVVPFMKKTF 180
  181 YKRLLLYFIA LAIGTLYSNA LFQLIPEAFG FNPQDNYVSK SAVVFGGFYL FFFTEKILKM 240
  241 LLKQKNEHHH GHNHFTSETL PSKKDQEEGV TEKLQNGDLD HMIPQHCNSE LDGKAPGTDE 300
  301 KVIVNSMSVQ DLQASQSACY WLKGVRYSDI GTLAWMITLS DGLHNFIDGL AIGASFTVSV 360
  361 FQGISTSVAI LCEEFPHELG DFVILLNAGM SIQQALFFNF LSACCCYLGL AFGILAGSHF 420
  421 SANWIFALAG GMFLYIALAD MFPEMNEVCQ EDEKNDSFLV PFVIQNLGLL TGFSIMLVLT 480
  481 MYSGQIQIG