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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47059497, gi|...
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVQLDNHQ LIPPGGGGGS SGGGGSSSGS ASAPAPPPPA AAVAAAAAAA ASPGYRLSTL  60
   61 IEFLLHRAYS ELMVLTDLLP RKSDVERKIE IVQFASRTRQ LFVRLLALVK WANDAGKVEK 120
  121 CAMISSFLDQ QAILFVDTAD RLASLARDAL VHARLPSFAI PYAIDVLTTG SYPRLPTCIR 180
  181 DKIIPPDPIT KIEKQATLHQ LNQILRHRLV TTDLPPQLAN LTVANGRVKF RVEGEFEATL 240
  241 TVMGDDPEVP WRLLKLEILV EDKETGDGRA LVHSMQIDFI HQLVQSRLFA DEKPLQDMYN 300
  301 CLHCFCLSLQ LEVLHSQTLM LIRERWGDLV QVERYHAGKS LSLSVWNQQV LGRKTGTASV 360
  361 HKVTIKIDEN DVSKPLQIFH DPPLPASDSK LVERAMKIDH LSIEKLLIDS VHARAHQRLQ 420
  421 ELKAILRSFN ANESSSIETA LPALIVPILE PCGNSECLHI FVDLHSGMFQ LMLYGLDPAT 480
  481 LEDMEKSLND DMKRIIPWIQ QLKFWLGQQR CKQSIKHLPT ITTETLQLAN YSTHPIGSLS 540
  541 KNKLFIKLTR LPQYYIVVEM LEVPNKPTQL SYNYYFMSVS TADREDSPVM ALLLQQFKDN 600
  601 IQDLMSYTKT GKQTRTGTKH KLSDDPCPID SKKAKRSGEM CAFNKVLAHF VAMCDTNMPF 660
  661 VGLRLELSNL EIPHQGVQVE GDGFNHAIRL LKIPPCKGIS EETQKALDRS LLDCTFRLQG 720
  721 RNNRTWVAEL VFANCPLNGT STREQGKIFH TVFLLMSIFL KVLVTISFFL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle