YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47059131, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVAFPTSF FLCLLLASGL AQAGRLLVVP MDGSHWFTMQ MVVEKLIHRG HEVVVVIPEV  60
   61 SWQLGKSLNC TVKTYSISHT LEDLDREFKY LSYTQWKTPE HSIRSFLTGS ARGFFELTFS 120
  121 HCRSLFNDKK LVEYLKQRSF DAVFLDPFDV CGLIVAKYFS LPSVIFARGV FCDYLEEGGQ 180
  181 CPSLPSYVPR LFSKYTDTMT FKERVWNHLI YIEEHAFCSY FLRTAVEVAS EILQTPVTMT 240
  241 DLFSPVSIWL LRTDFVLEFP RPVMPNMVFI GGINCLQKKS LSKEFEAYVN ASGEHGIVVF 300
  301 SLGSMVSEIP EKKAMEIAEA LGRIPQTVLW RYTGTRPSNL AKNTILVKWL PQNDLLGHPK 360
  361 TRAFITHSGS HGIYEGICNG VPMVMMPLFG DQMDNAKRME TRGAGVTLNV LEMTADDLEN 420
  421 ALKTVINNKS YKENIMRLSS LHKDRPIEPL DLAVFWVEYV MRHKGAPHLR PAAHDLTWYQ 480
  481 YHSLDVIGFL LAIVLTVVFI VFKCCAYGCR KCFGGKGRVK KSHKSKTH

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	485	0.99
Transmembrane Helix	486	507	0.86
Cytoplasmic	508	528	0.87