YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51470911\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVEIKGLG PESTIFLWEI PESDDMEDLP LLASGEVLLV LFVTERMPIA NDTQFHTSSF  60
   61 LLLGIPGLED VHIWIGFPFF SVYLIALLGN AAIFFVIQTE QSLHEPMYYC LAMLDSIDLS 120
  121 LSTATIPKML GIFWFNIKEI SFGGYLSQMF FIHFFTVMES IVLVAMAFDR YIAICKPLWY 180
  181 TMILTSKIIS LIAGIAVLRS LYMVIPLVFL LLRLPFCGHR IIPHTYCEHM GIARLACASI 240
  241 KVNIMFGLGS ISLLLLDVLL IILSHIRILY AVFCLPSWEA RLKALNTCGS HIGVILAFST 300
  301 PAFFSFFTHC FGHDIPQYIH IFLANLYVVV PPTLNPVIYG VRTKHIRETV LRIFFKTDH

Type	Start	End	Confidence
Cytoplasmic	1	53	0.60
Transmembrane Helix	54	68	0.26
Non-Cytoplasmic	69	72	0.49
Transmembrane Helix	73	97	0.87
Cytoplasmic	98	106	0.64
Transmembrane Helix	107	127	0.65
Non-Cytoplasmic	128	149	0.75
Transmembrane Helix	150	172	0.87
Cytoplasmic	173	182	0.74
Transmembrane Helix	183	210	0.75
Non-Cytoplasmic	211	247	0.76
Transmembrane Helix	248	271	0.80
Cytoplasmic	272	286	0.77
Transmembrane Helix	287	309	0.87
Non-Cytoplasmic	310	318	0.79
Transmembrane Helix	319	341	0.86
Cytoplasmic	342	359	0.93