YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51468566
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFQPHWAVS SQMRQNSRVE FLQTRSVPVA PRRCRSTTYT CASVESFTCS FLVHWTLTRL  60
   61 KTRDMPLLGS LGLDTSSWDH LRKGTGCAGT MEVVLIFLCS LLALIVMASA AELPSLKLSL 120
  121 QQVMTEGFPF CCGQHTGMDR GRVRGLCFSA HVPLVSRDNS RILSGHRDLF SIELNKKSIY 180
  181 SRVPECQVTT YYYVGFAYLM MCHYQDAIRV FANILLYIQR TKSMFQRTTY KYEMINKQNE 240
  241 QMHALLAIAL TMYPMSIDES IHLQRWDKYS NKMLCMQKGD PEVYEELFSY FCPKFLSPVV 300
  301 PNYDNVHPNY HKEPFLQQPK VFSDEVQQQA QLSTIRSFLK LYTTMPVAKL AGFLDLTEQE 360
  361 FRIQLPVFKH KLKNLVWTSS ITTLDDEFQS ASEVDFYIDK DMIHIMDTKV ARRYGNFFIR 420
  421 QIHRFEELNR TLKKMGQRP

Type	Start	End	Confidence
Cytoplasmic	1	89	0.91
Transmembrane Helix	90	111	0.89
Non-Cytoplasmic	112	439	0.95