YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51464271
Protein type:	Transmembrane
Type Confidence:	0.40
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTTRSTFS TNYWGSGSQI SVSRSTSFQA AVLTAGMAGG LAGVGGVQNE KETMQSLNDC  60
   61 LASYLDRERS LETVNWKLES KIQEHLENKG PQVRDWSHYL KTIEDLRAQI FANTVDNPRI 120
  121 VLQIDNAHLA GDDFRVKYET ELAMHQSVES NIHGLRKVTD DTNVTQLQLQ TEIEPLKEEL 180
  181 LFMKKHEEEV KGLQAQIASS GLTMEVDAPK SQDLAKIMAD IRDQYDELAR KNREDLDKYW 240
  241 SQXIEESTTV VTTQSVEVAA AEMMLMELRR TVQSLETDLD SMRNLKASLE NSLRDLEARY 300
  301 TLQMEQLNGI LLHLESELAQ TQAERQRQAQ EXEALLNIKL KLEAEITSYR CPLEDGEDFN 360
  361 LGDALDSSNS MQTIQKTTTC QIVNGKVVSE TNDIKVLRH

Type	Start	End	Confidence
Cytoplasmic	1	25	0.37
Transmembrane Helix	26	43	0.38
Non-Cytoplasmic	44	399	0.98