YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51464263, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPAVQKGL WRDVHSSIGF QLFFSSGGSR TANIALSNPF FRSCCVGTGP SIYLTAFRLW  60
   61 AGFSAVSGVI GFYLFLVIFS IIDPLRSIWV VTSKKGAFGQ CSLAPKCQSS LLSRKKTPRP 120
  121 PPVLRPEETS ASVGLPKKGE KEQQEAIEHI DEIQNEIDRL NEQDNEEILK VEQKYNKLRQ 180
  181 PFFQKRSELI SKILNLGVTT FGNHLQVSAL LGKENEETLH YLTRVEVTEF EDIKSGYRVD 240
  241 FYFDENPYFE NKVLSKEFHL NESGNPSSKS TEIKWKSGKD VTKRLSQMQN KASRKRQHEA 300
  301 PESFLTWFTD HSDAGADDLG EDIKDDIWPN PLQYYLVPHM DDEEGEDDNE EEEEGLEDTD 360
  361 EEGDEDEGEE DDDEGEEGEK DERDD

Type	Start	End	Confidence
Cytoplasmic	1	58	0.61
Transmembrane Helix	59	82	0.86
Non-Cytoplasmic	83	385	0.62