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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|51460657
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFYEERTT KIAARDLQEF VPFGGDHCKH HPNALNLQLR QLQPASELWS SNGAAGFVGS  60
   61 LQEVTIHEKQ KESWQLRKGV SEIGEDVDYD EELYVAGNMV IWSKGSKSQA LAVYKAFTVD 120
  121 SPVQQALWCD FIISQDKSEK AYSSNEVEKC ICILQSSCIN MHSIEGKDYI ASLPFQVANV 180
  181 WPTKYGLLFE RSASSHEVPP GSPRESLPTM FSMLHPLDEI TPLVCKSGSL FGSLRVQYVV 240
  241 DHAMKIVFLN TDPSIVMTYD AVQNVHSVWT LRRVKSEEEN VVLKFSEHGG TPRNVATSSS 300
  301 LTAHLRSLSK GDSPVISPFR NYSSIHSQSR STSSPSLHSR SPSISNMAAL SRAHSPALGV 360
  361 HSFSGVQRFN ISSHNQSPKR HSISHSPNSK SNGFFLAPET EPIVPELCID HLWTETITNI 420
  421 SCVKFQESND KTQLIFVSVT NIPAKDAAPV EKIDTMLVLE GSGNLVLYTG VVRVGKVFIP 480
  481 GLPAPSLTMS NTMPQPSTPL DGVSAPKPLS KLLGSLDEVL LLSPVPELRD SSKLHDSLYN 540
  541 EDCTFQQLGT YIDSIRDPVH NRVTLELSNG SMVRITVPEI ATSELVQTCL QTIKFILPKE 600
  601 IAVQMLVKWY NVHSAPGGPS YHSEWNLFVT CLMNVMGFNT DRLAWTRNFD FEGSLSPVIA 660
  661 PKKARPSETG SDDWLSGAFL LELATAAGLS AGFTRLGSQV GGAMRRSKAY GERYLASVQG 720
  721 SAPSPGKFIL PKEIAVQMLV KWYNVHSAPG GPSYHSEWNL FVTCLMNVMG FNTDRLAWTR 780
  781 NFDFEGSLSP VIAPKKARPS ETGSDDPEFS SSVAEGPTAA KEDEDSPEQP EPPELIVVGA 840
  841 AASLPAAVNT LTEVGLVVHS WAQLSKLLLR RPKCPPGLLA AVPAAGPSHT STYSPLRTTA 900
  901 SSTASRPAPA TSAATAMVPA RPIFAEATIT PRPELPSPEP TFLSEHIHPH HKRTPVYSTR 960
  961 APTSPRIHSA DAVHKCVTVV LRRLRQWLSG AFLLELATAA GLSAGFTRLG SQVGGAMRRS1020
 1021 KAYGERYVAS VQGSAPSPGK YPRGLVLGGL GTRVLYRRVS SHVLDIYFIC CGGGRTSLAW1080
 1081 RNPVGTDAAP GELWRLCRVT TYVCTYLSVQ ERDPRAHRFL GLLYELEENT EKAVECYREH1140
 1141 LLDCEGEDGW NKLFDWIQSE LYVRPDDVHM NIRLVELYRS NKRLKDAVAR CHEAERNIAL1200
 1201 RSSLEWNSCV VQTLKEYLES LQCLESDKSD WRATNTDLLL AYANLMLLTL STRDVQESRE1260
 1261 LLESFDSALQ SAKSSLGGND ELSATFLEMK GHFYMHAGSL LLKMGQHGNN VQWQALSELA1320
 1321 ALCYVIAFQV PRPKIKLIKG EAGQNLLEMM ACDRLSQSGH MLLNLSRGKQ DFLKEVVETF1380
 1381 ANKSGQSVLY NALFSSQSSK DTSFLGSDDI GNIDVQEPEL EDLARYDVGA IQAHNGSLQH1440
 1441 LTWLGLQWNS LPALPGIRKW LKQLFHHLPQ ETSRLETNAP ESICILDLEG RGLNSSYDQQ1500
 1501 EYIGRSVHYW KKVLPLLKII KKNSIPEPID PLFKHFHSVD IQASEIVEYE EDAHITFAIL1560
 1561 DAVHGNIEDA VTAFESIKSV VSYWNLALIF HRKAEDIEND AVFPEEQEEC KNYLRKTRDY1620
 1621 LIKIIDDSDS NLSVVKKLPV PLESVKEMLK SVMQELEDYS EGGPLYKNGS LRNADSEIKH1680
 1681 STPSPTKYSL SPSKSYKYSP KTPPRWAEDQ NSLRKMICQE VKAITKLNSS KSASRHRWPT1740
 1741 ENYGPDSVPD GYQGSQTFHG APLTVATTGP SVYYSQSPAY NSQYLLRPAA NVTPTKGSSN1800
 1801 TEFKSTKEGF SIAVSADGFK FGISEPGNQE KKSEKPLEND TGFQAQDISG QKNGRGVIFG1860
 1861 QTSSTFTFAD VAKSTSGEGF QFGKKDPNFK GFSGAGEKLF SSQCGKMANK ANTSGDFEKD1920
 1921 DDACKTEDSD DIHFEPVVQM PEKVELVTGE EGEKVLYSQG VKLFRFDAEI SQWKERGLGN1980
 1981 LKILKNEVNG KPRMLMRRDQ VLKVCANHWI TTTMNLKPLS GSDRAWMWLA SDFSDGDAKL2040
 2041 ERLAAQFKTP ELAEEFKQKF EECQRLLLDI PLQTPHKLVD TGRAAKLIQR AEEMKSGLKD2100
 2101 FKTFLTNDQT KVTEEENKGS GTGAAGASDT TIKPNPENTG PTLEWDNYDL REDALDDNVS2160
 2161 SSSVHDSPLA SSPVRKNIFR FDESTTGFNF SFKSALSLSK SPAKLNQSGT SVGTDEESDV2220
 2221 TQEEERDGQY FEPVVPLPDL VEVSSGEENE QVVFSHRAEL YRYDKDVGQW KERGIGDIKI2280
 2281 LQNYDNKQVR IVMRRDQVLK LCANHRITPD MSLQNMKGTE RVWVWTACDF ADGERKVEHL2340
 2341 AVRFKLQDVA DSFKKIFDEA KTAQEKDSLI TPHVSRSSTP RESPCGKIAV AVLEETTRER2400
 2401 TDVIQGDDVA DAASEVEVSS TSETTTKAVV SPPKFVFGSE SVKRIFSSEK SNPFAFGNSS2460
 2461 ATGSLFGFSF NAPLKSNDSE TSSVAQSGSE SKVEPKKCEL SKNSDIEQSS DSKVKNLSAS2520
 2521 FPMEESSINY TFKTPEKEPP LWHAEFTKEE LVQKLSSTTK SADQLNGLLR ETEATSAVLM2580
 2581 EQIKLLKSEI RRLERNQEES AANVEHLKNV LLQFIFLKPG SERESLLPVI NTMLQLSPEE2640
 2641 KGKLAAVAQA KNNARLSKIK RRNEVPWPMI RGGTEGKRSF LHCPHHSEPG VPGDSVTARR2700
 2701 TAPRAPRETP GAGWGRGTRG AHSGVGSLQV RWAAPSPTFI RTGARRSRPG FRVVRAPSEL2760
 2761 AARSRQVRGK SDEEGKKSQG SGGLRASGEA RAGPEARGWA AALGSSAPRC PQPFGPGPAE2820
 2821 AASCSSFPKR AAREAEAAEA AGALAAAPGE PRAAGARLPH GALAPWRVAA APVRSLHSAP2880
 2881 RPQAPLATFG CLRRRGRLFL FSREPTDDLV LPGGTKCRRL GGGGWPPGRG KEAERAVPST2940
 2941 PSGWGVRPGE NGRRNATGAH TRRHSNGPQR SESATTTRSI NKEAETGPHH SAQKRGIPTN3000
 3001 GRGEWERGTV IPNFWATDPS PGMKNQARPP GGWFCVGGGS LMGIKGGGDW ARVRGAACCS3060
 3061 RKARAGCQRC PGLATPRRSC PHPPRTVALW PLGLEPLLTV ASPQSHVPGS LAGWKEHALE3120
 3121 SRAAWPLLPR KPYAIGSDRL YPLGSLCLSP SEASQMKDED FSQNLSLDSS TLLFTHIPAI3180
 3181 FFVLHLVYEE LKLNTLMGEG ICSLVELLVQ LARDLKLGPY VDHYYRDYPT LVRTTGQVCT3240
 3241 IDPGQTGFMH HPSFFTSEPP SIYQWVSSCL KGEGMPPYPY LPGICERSRL VVLSIALYIL3300
 3301 GDESSVSDES SQYLTRITVA PQKLQAEQVE NRFSFRHSTS VSSLAERLVG WMTNVGFTLR3360
 3361 DLETLPFGIA LPIRDAIYHC REQPASDWPE AVCLLIGRQD LSKQACEGNL PKGKSVLSSD3420
 3421 VPSGTETEEK DDGMNDMNHE VMSLIWSEDL RVQDVRRLLQ SAHPVRVNVV QYPELSDHEF3480
 3481 IEEKENRLLQ LCQQTMALPV GRGMFTFFSY HPVPTEPLPI PKLNLTGRAP PRNTTVDLNS3540
 3541 GNIDVPPNMT SWASFHNGVA AGLKIAPASQ IDSAWIVYNK PKHAELANEY AGFLVALGLN3600
 3601 GYLTKLATFN IHDYLTKGHE MTSIGLLLGV SAAKLGTMDM SITRLLSIRI PALLPPTSTE3660
 3661 LDVPHNVQVA AVVGIGLVYQ GTAHRHTAEV LLAEIGRPPG PEMEYCTDRE SYSLAAGLAL3720
 3721 GMVCLGHGSN LIGMSDLNVP EQLYQYMVGG RRRFQTGMHR EKHKSPSYQI KEGDTINVDV3780
 3781 TCPGATLALA MIYLKTNNRS IADWLRAPDT MYLLDFVKPE FLLLRTLARC LILWDDILPN3840
 3841 SKWVDSNVPQ IIRENSISLS EIELPCSEDL NLETLSQAHV YIIAGACLSL GFXFAGSENL3900
 3901 PAFNCLHKFA KDFMTYLSAP NASVTGPHNL ETCLSVVLLS LPMVMAGSGN LKVLQLCRFL3960
 3961 HMKTGGEMNY GFHLAHHMAL GLLFLGGGSY SLSTSNSSIA ALLCALYPHF PAHSTDNRYH4020
 4021 LQALRHLYVL AAEPRLLVPV DVDTNTPCYA LLEVTYKGTQ WYEQTKEELM APTLLPELHL4080
 4081 LKQIKVKGPR YWELLIDLSK GTQHLKSILS KDGVLYVKLR AGQLSYKEDP MGWQSLLAQT4140
 4141 VANRNSEARA FKPETISAFT SDPALLSFAE YFCKPTVNMG QKQEILDLFS SVLYECVTQE4200
 4201 TSEMLPAYIA MDQAIRRLGR REMSETSELW QIKLVLEFFS SRSHQERLQN HPKRGLFMNS4260
 4261 EFLPVVKCTI DNTLDQWLQV GGDMCVHAYL SGQPLEESQL SMLACFLVYH SVPAPQHLPP4320
 4321 IGLEGSTSFA ELLFKFKQLK MPVRALLRLA PLLLGNPQPM VM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle