YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38454216, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALWPLLLA LGLGCIGAGG FVAHVESTCL LDDEGTPMDF TYCISFNKDL LACWDPEEGQ  60
   61 IVPCEYGVLF KLAEFISNIL NKEEGLIQRL KNGLQDCSTH TQPFWNALTH RTRTPSVQVA 120
  121 QTAPFNTREP VMLACYVWGF YPADVTVVWM KNGQLVTSHS NKEKTAQPNG DWTYQTVSYL 180
  181 ALTPSYWDIY TCVVQHSGTP EPIRANWTPG LSPIQTVKVS VSAATLGLGF IIFCLGFFRW 240
  241 RKSHSSSYTP LPGSTYPEGR P

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	218	0.99
Transmembrane Helix	219	238	0.91
Cytoplasmic	239	261	0.92