YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1197182, gi\|3...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLFVELVQV FLTIMSFLGP RGVWAIKADH MGSYGPAFYQ SYDASGQFTH EFDGEQIFSV  60
   61 DLKKGEVVWR LPEFADFAYS DFQSGLMSIS MIRAHLDVLV ERSNRTRAVS VPPRVTVFPK 120
  121 SRVELGKPNV LICMVEDIFP PMINITWLRN SQPITKGVTQ TSFYSQPNHR FRKFHYLTFV 180
  181 PTAEDVYDCR VEHWGLDAPL LQHWEPQVLT PPPDTTETLI CGLGLALGLV GCLLGTVLMV 240
  241 TATRMPSTRR

Type	Start	End	Confidence
Signal Peptide	1	25	0.85
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	218	0.98
Transmembrane Helix	219	242	0.91
Cytoplasmic	243	250	0.91