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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ABCA7_RAT
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFCTQLMLL LWKNYTYRRR QPIQLVVELL WPLFLFFILV AVRHSHPPLE HHECHFPNKP  60
   61 LPSAGTVPWL QGLVCNVNNS CFQHPTPGEK PGVLSNFKDS LISRLLADAH TVLGGHSTQD 120
  121 MLAALGKLIP VLRAVGSGAW PQESNQPAKQ GSVTELLEKI LQRASLETVL GQAQDSMRKF 180
  181 SDATRTVAQE LLTLPSLVEL RALLRRPRGS AGSLELISEA LCSTKGPSSP GGLSLNWYEA 240
  241 NQINEFMGPE LAPTLPDSSL SPACSEFVGA LDDHPVSRLL WRRLKPLILG KILFAPDTNF 300
  301 TRKLMAQVNQ TFEELALLRD LHELWGVLGP QIFNFMNDST NVAMLQKLLD VEGTGWQQQT 360
  361 PKGQKQLEAI RDFLDPSRGR YNWQEAHADM GRLAEILGQI LECVSLDKLE AVPSEEALVS 420
  421 RALELLGERR LWAGIVFLSP EHPLDSSEPP SPTTTGPGHL RVKIRMDIDD VTRTNKIRDK 480
  481 FWDPGPSADP LMDLRYVWGG FVYLQDLLEQ AAVRVLSGRD SRAGLYLQQM PHPCYVDDVF 540
  541 LRVLSRSLPL FLTLAWIYSV ALTVKAVVRE KETRLRETMR AMGLSRAVLW LGWFLSCLGP 600
  601 FLVSAALLVL VLKLGNILPY SHPVVVFLFL AAFAVATVAQ SFLLSAFFSR ANLAAACGGL 660
  661 AYFALYLPYV LCVAWRERLP LGGLLAVSLL SPVAFGFGCE SLALLEEQGD GAQWHNLGTG 720
  721 PAEDVFSLAQ VSAFLLLDAV IYGLALWYLE AVCPGQYGIP EPWNFPFRRS YWCGPGPPKS 780
  781 SVLAPAPQDP KVLVEEPPPG LVPGVSIRGL KKHFRGSPQP ALRGLNLDFY EGHITAFLGH 840
  841 NGAGKTTTLS ILSGLFPPSS GSASILGHDV QTNMAAIRPH LGICPQYNVL FDMLTVEEHV 900
  901 WFYGRLKGVS AAAIDSEQEH LIRDVGLIPK RDTQTRHLSG GMQRKLSVAI AFVGGSRVVI 960
  961 MDEPTAGVDP ASRRGIWELL LKYREGRTLI LSTHHLDEAE LLGDRVAMVA SGSLCCCGSP1020
 1021 LFLRRHLGCG YYLTLVKSSQ SLVTHDLKGD TEDPRREKKS GSEGKTADTV LTRDGPHRSS1080
 1081 QVPAPDAVPV TPSAALILEL VQRHVPGAQL VEELPHELVL ALPYAGALDG SFATVFQELD1140
 1141 QQLERLGLTG YGISDTNLEE IFLKVVEEAH AHGEGGDPRQ QQHLLTATPQ PHTGPEASVL1200
 1201 ENGELAKLVL DPQAPKGSAP TTAQVQGWTL TCQQLRALLH KRFLLARRSR RGLFAQIVLP1260
 1261 ALFVGLALFF TLIVPPFGQY PPLQLSPAMY GPQVSFFSED APADPNRMKL LEALLGEAGL1320
 1321 QDPSVQGKGS RGSECTHSLA CYFTVPEVPP DVASILASGN WTPDSPSPAC QCSQPGARRL1380
 1381 LPDCPAGAGG PPPPQAMAGF GEVVQNLTGR NVSDFLVKTY PSLVRRGLKT KKWVDEVRYG1440
 1441 GFSLGGRDPD LPSGREVVRT VAEMRALLSP QPGNTLDRIL NNLTQWALGL DARNSLKIWF1500
 1501 NNKGWHAMVA FVNRANNGLL RAFLPSGSVR HAHSITTLNH PLNLTKEQLS EATLIASSVD1560
 1561 VLVSICVVFA MSFVPASFTL VLIEERITRA KHLQLVSGLP QTLYWLGNFL WDMCNYLVAV1620
 1621 CIVVLIFLAF QQKAYVAPEN LPALLLLLLL YGWSITPLMY PASFFFSVPS TAYVVLTCIN1680
 1681 LFIGINSSMA TFVLELLSDQ NLQEVSRILK QVFLIFPHFC LGRGLIDMVR NQAMADAFER1740
 1741 LGDKQFQSPL RWDIIGKNLL AMVAQGPLFL LITLLLQHRN RLLPQPKSRL PPPLGEEDED1800
 1801 VVRERERVTK GATQGDVLVL RDLTKVYRGQ RSPAVDHLCL GIPPGECFGL LGVNGAGKTS1860
 1861 TFRMVTGDTL PSSGEAVLAG HNVAQEPSAA HRSMGYCPQS DAIFDLLTGR EHLELFARLR1920
 1921 GVPEAQVAQT ALSGLVRLGL PSYADRPAGT YSGGNKRKLA TALALVGDPA VVFLDEPTTG1980
 1981 MDPSARRFLW NNLLSVVREG RSVVLTSHSM EECEALCTRL AIMVNGRFRC LGSAQHLKSR2040
 2041 FGAGHTLTLR VPPDQPEPAI AFIVTTFPDA ELREVHGSRL RFQLPPGGGC TLARVFRELA2100
 2101 AQGKAHGVED FSVSQTTLEE VFLYFSKDQG EEEEGSGQET ETREVSTPGL QHPKRVSRFL2160
 2161 EDPSSVETVI 

YRC Informatics Platform - Version 3.0
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