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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPA1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSLRRVLR PEERKEVQGV VYRGVGKDMD CSKESFKVDI EGDMCRLEAF IKNRRKLSKY  60
   61 EDENLCLLHH AAAEGQVELM QLIINGSSCE ALNVMDDYGN TPLHWAAEKN QVESVKFLLS 120
  121 QGANPNLRNR NMMAPLHIAV QGMYNEVIKV LTEHKATNIN LEGENGNTAL MSTCAKDNSE 180
  181 ALQILLEKGA KLCKSNKWGD YPVHQAAFSG AKRCMELILA YGEKTGYSRE AHINFVNHKK 240
  241 ASPLHLAVQS GDLDMIKMCL DSGAHIDMME NAKCMALHFA ATQGATDIVK LMISSYTGSS 300
  301 DIVNAVDGNQ ETLLHRASLF DHHDLADYLI SVGADINSTD SEGRSPLILA TASASWNIVN 360
  361 LLLSKGAKVD IKDHLGRNFL HLTVQQPYGL RNLRPEFLQM QHIKELVMDE DNDGCTPLHY 420
  421 ACRQGAPVSV NNLLRFNVSV HSKSKDKKSP LHFAASYGRI NTCQRLLQDI SDTRLLNEGD 480
  481 LHGMTPLHLA AKNGHDKVVQ LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK 540
  541 CTDRLDEEGN TALHFAAREG HAKAVAMLLS YNADILLNKK QASFLHIALH NKRKEVVLTT 600
  601 IRSKRWDECL QVFTHDSPSN RCPIMEMVEY LPECMKVLLD FCMIPSTEDK SCQDYHIEYN 660
  661 FKYLQCPLSM TKKVTPTQDV IYEPLTILNV MVQHNRIELL NHPVCREYLL MKWCAYGFRA 720
  721 HMMNLGSYCL GLIPMTLLVV KIQPGMAFNS TGIINETIST HEERINTLNS FPLKICMILV 780
  781 FLSSIFGYCK EVVQIFQQKR NYFLDYNNAL EWVIYTTSMI FVLPLFLDIP AYMQWQCGAI 840
  841 AIFFYWMNFL LYLQRFENCG IFIVMLEVIF KTLLRSTGVF IFLLLAFGLS FYVLLNFQDA 900
  901 FSTPLLSLIQ TFSMMLGDIN YRDAFLEPLF RNELAYPVLT FGQLIAFTMF VPIVLMNLLI 960
  961 GLAVGDIAEV QKHASLKRIA MQVELHTNLE KKLPFWYLRK VDQRSTIVYP NRPRHGRMLR1020
 1021 FFHYFLSMQE TRQEAPNIDT CLEMEILKQK YRLKDLTSLL EKQHELIKLI IQKMEIISET1080
 1081 EDEDNHCSFQ DRFKKERLEQ MHSKWNFVLN AVKTKTHCSI SHPDI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle