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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AMGO1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPQRDLRGL WLLLLSLFLL LFEVARAGRP VVSCPANCLC ASNILSCSKQ QLPNVPQSLP  60
   61 GYTALLDLSH NNLSRLKAEW TPTRLTNLHS LLLSHNHLNF ISSEAFVPVP NLRYLDLSSN 120
  121 HLHTLDEFLF SGLQALEVLL LYNNHIVVVD RNAFEDMAQL QKLYLSQNMI SRFPLELIKD 180
  181 ANRLPKLTLL DLSSNKLKKL PLTDLQKLPA WVKNGLYLHN NPLECDCKLY QLFSHWQYRQ 240
  241 LSSVMDFQED LYCVHSKKLH NVFSLDFFNC SEYKESAWEA HLGDTLTITC DTKQQGMTKV 300
  301 WVTPSNEQVL NQGANGTVTV SEDGNLHFKE VQVEDGGVYT CYAMGETFNE TLSVELKVYN 360
  361 FTLHGHHDTL NTAYTTLVGC ILSVVLVLIY LYLTPCRCWC RGVEKPSSHQ GDSLSSSMLS 420
  421 TTPNHDPMAG GDKDDGFDRR VAFLEPAGPG QGQNGKLKPG NTLPVPEATG KGQRRMSDPE 480
  481 SVSSVFSDTP IVV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle