YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VKOR1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTWRSPGR LRLALCLAGL ALSLYALHVK AARARNEDYR ALCDVGTAIS CSRVFSSRWG  60
   61 RGFGLVEHVL GADSILNQSN SIFGCMFYTI QLLLGCLRGR WASILLILSS LVSVAGSLYL 120
  121 AWILFFVLYD FCIVCITTYA INAGLMLLSF QKVPEHKVKK P

Type	Start	End	Confidence
Signal Peptide	1	31	0.90
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	74	0.92
Transmembrane Helix	75	95	0.79
Cytoplasmic	96	103	0.64
Transmembrane Helix	104	123	0.91
Non-Cytoplasmic	124	126	0.63
Transmembrane Helix	127	150	0.84
Cytoplasmic	151	161	0.87