YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38014548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGTGTLV ASIASKVASS VAVVKAGGAV SSTILASSQG LNLLAQTALG SGASALGSAL  60
   61 GALKAGTVLS SLPASALAVC PIGVKTAVAM LGGAVTVAAV PPVLSAVGFT GSGIAASSLA 120
  121 AKLMSVSAIA NGGGVPAGGL VATLQSAGAA GLSMTSKVLV GSTGSAVVAS VMGVCKHLYS 180
  181 FL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.64
Transmembrane Helix	21	36	0.65
Non-Cytoplasmic	37	42	0.46
Transmembrane Helix	43	68	0.67
Cytoplasmic	69	71	0.39
Transmembrane Helix	72	89	0.60
Non-Cytoplasmic	90	90	0.21
Transmembrane Helix	91	121	0.69
Cytoplasmic	122	122	0.40
Transmembrane Helix	123	149	0.73
Non-Cytoplasmic	150	157	0.42
Transmembrane Helix	158	179	0.85
Cytoplasmic	180	182	0.51