YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAV2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLETEKADV QLFMADDAYS HHSVVDYTDP EKYVDSSQDR DPHQLNSHLK LGFEDLIAEP  60
   61 PTTHSFDKVW ICSHALFEIS KYVIYKFLTV FLAIPLAFIA GILFATLSCL HIWILMPFVK 120
  121 TCLMVLPSVQ TIWKSVTDVV IGPLCTSVGR IFSSVSMQLS HD

Type	Start	End	Confidence
Cytoplasmic	1	86	0.90
Transmembrane Helix	87	115	0.82
Non-Cytoplasmic	116	134	0.61
Transmembrane Helix	135	153	0.54
Cytoplasmic	154	162	0.57