YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16758518, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.98
Transmembrane Helix	93	115	0.89
Non-Cytoplasmic	116	131	0.93
Transmembrane Helix	132	153	0.85
Cytoplasmic	154	162	0.77
Transmembrane Helix	163	180	0.93
Non-Cytoplasmic	181	236	0.83
Transmembrane Helix	237	256	0.94
Cytoplasmic	257	309	0.95
Transmembrane Helix	310	332	0.85
Non-Cytoplasmic	333	348	0.91
Transmembrane Helix	349	371	0.93
Cytoplasmic	372	528	0.99
Transmembrane Helix	529	548	0.92
Non-Cytoplasmic	549	598	0.72
Transmembrane Helix	599	621	0.46
Cytoplasmic	622	655	0.67
Transmembrane Helix	656	678	0.88
Non-Cytoplasmic	679	727	0.79
Transmembrane Helix	728	750	0.86
Cytoplasmic	751	865	0.92
Transmembrane Helix	866	889	0.86
Non-Cytoplasmic	890	907	0.80
Transmembrane Helix	908	929	0.82
Cytoplasmic	930	938	0.69
Transmembrane Helix	939	961	0.85
Non-Cytoplasmic	962	993	0.79
Transmembrane Helix	994	1018	0.75
Cytoplasmic	1019	1065	0.82
Transmembrane Helix	1066	1087	0.76
Non-Cytoplasmic	1088	1114	0.88
Transmembrane Helix	1115	1137	0.92
Cytoplasmic	1138	1188	0.89
Transmembrane Helix	1189	1208	0.85
Non-Cytoplasmic	1209	1219	0.81
Transmembrane Helix	1220	1243	0.84
Cytoplasmic	1244	1252	0.84
Transmembrane Helix	1253	1271	0.68
Non-Cytoplasmic	1272	1324	0.70
Transmembrane Helix	1325	1344	0.93
Cytoplasmic	1345	1415	0.69
Transmembrane Helix	1416	1440	0.88
Non-Cytoplasmic	1441	1981	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESEVGKDT TPEPSPANGT GPGPEWGLCP GPPTVGTDTS GASGLGTPRR RTQHNKHKTV  60
   61 VVASAQRSPR ALFCLTLTNP IRRSCISIVE WKPFDILILL TIFANCVALG VYIPFPEDDS 120
  121 NTATHNLEQV EYVFLVIFTV KTVLKIVAYG LVLHPSAYIR NGWNLLDFII VVVGLFSVLL 180
  181 EQGPGRPGDA PHTGGKPGGF DVKALRAFRV LRPLRLVSGV PSLHIVLNSI MKALVPLLHI 240
  241 ALLVLFVIII YAIIGLELFL GRMHKTCYFL GSDMEAEEDP SPCASSGSGR SCTLNQTECR 300
  301 GRWPGPNGGI TNFDNFFFAM LTVFQCITME GWTDVLYWMQ DAMGYELPWV YFVSLVIFGS 360
  361 FFVLNLVLGV LSGEFSKERE KAKARGDFQK LREKQQMEED LRGYLDWITQ AEELDLHDPS 420
  421 VDGNLASLAE EGRAGHRPQL SELTNRRRGR LRWFSHSTRS THSTSSHASL PASDTGSITD 480
  481 TPGDEDEEEG TMASCTLCLN KIMKTKVCRH FRRANRGLRA RCRRAVKSNA CYWAVLLLVF 540
  541 LNTLTIASEH HGQPVWLTQT QEYANKVLLC LFTVEMLLKL YGLGPSVYVA SFFNRFDCFV 600
  601 VCGGILETTL VEVGAMQPLG ISVLRCVRLL RIFKVTRHWA SLSNLVASLL NSMKSIASLL 660
  661 LLLFLFIIIF SLLGMQLFGG KFNFDQTHTK RSTFDTFPQA LLTVFQILTG EDWNVVMYDG 720
  721 IMAYGGPFFP GMLVCVYFII LFICGNYILL NVFLAIAVDN LASGDAGAAK DKGREKSSEG 780
  781 NPPQENKVLV PGGENEDTEG TKSEGAAPGM EEEEEEEEEE EEENGAGHVE LLQEVVPKEK 840
  841 VVPIPEGSAF FCLSQTNPLR KACHTLIHHH VFTSLILVFI ILSSVSLAAE DPIRAHSFRN 900
  901 HILGYFDYAF TSIFTVEILL KMTVFGAFLH QGSFCRSWFN LLDLLVVSVS LISFGIHSSA 960
  961 ISVVKILRVL RVLRPLRAIN RAKGLKHVVQ CVFVAIRTIG NIMIVTTLLQ FMFACIGVQL1020
 1021 FKGKFYSCTD EAKHTLKECK GSFLIYPDGD VSRPLVRERL WVNSDFNFDN VLSAMMALFT1080
 1081 VSTFEGWPAL LYKAIDAHAE DEGPIYNYHV EISVFFIVYI IIIAFFMMNI FVGFVIITFR1140
 1141 AQGEQEYQNC ELDKNQRQCV EYALKAQPLR RYIPKNPHQY RVWATVNSAA FEYLMFLLIL1200
 1201 LNTVALAMQH YEQTAPFNYA MDILNMVFTG LFTVEMVLKI IAFKPKHYFA DAWNTFDALI1260
 1261 VVGSVVDIAV TEVNNGGHLG ESSEDSSRIS ITFFRLFRVM RLVKLLSKGE GIRTLLWTFI1320
 1321 KSFQALPHVA LLIAMIFFIY AVIGMQMFGK VALQDGTQIN RNNNFQTFPQ AVLLLFRCAT1380
 1381 GEAWQEIMLA SLPGNRCDPE SDFGPGEEFT CGSNFAIVYF ISFFMLCAFL IINLFVAVIM1440
 1441 DNFDYLTRDW SILGPHHLDE FKRIWSEYDP GAKGRIKHLD VVALLRRIQP PLGFGKLCPH1500
 1501 RVACKRLVAM NVPLNSDGTV TFNATLFALV RTSLRIKTEG NLDQANQELR MVIKKIWKRI1560
 1561 KQKLLDEVIP PPDEEEVTVG KFYATFLIQD YFRKFRRRKE KGLLGADAPT STSSVLQAGL1620
 1621 RSLQDLGPEI RQALTYALEE EEEEEEARQV KEAEEEEAET TPETYKDSID SQPQAQWNSR1680
 1681 ISVSLPKLRE TPDSLSTGPS DDDGVAPNSR QPSGLQAGSQ PHRRGSGVFM FTIPEEGSTQ1740
 1741 LKGVQGQDNQ NEEQEVPDWT PNLDEQAGMP SNPVLLPPHW SQQHVNGHHV PRRRLLPPTP1800
 1801 AGRKPSFTIQ CLQRQGSCED LPIPGTYHRG RTSGPGRAQG SWAAPPQKGR LLYAPLLLVE1860
 1861 ESTVGEGYLG KLGGPLRTFT CLQVPGAPSD PSHRKRGSAD SLVEAVLISE GLGLFAQDPR1920
 1921 FVALAKQEIA DACHLTLDEM DSAASDLLAQ RTTSLYSDEE SILSRFDEED LGDEMACVHA1980
 1981 L