YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149054155, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.91
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	62	0.98
Transmembrane Helix	63	86	0.92
Cytoplasmic	87	94	0.96
Transmembrane Helix	95	116	0.94
Non-Cytoplasmic	117	132	0.92
Transmembrane Helix	133	156	0.83
Cytoplasmic	157	171	0.89
Transmembrane Helix	172	191	0.92
Non-Cytoplasmic	192	224	0.90
Transmembrane Helix	225	247	0.88
Cytoplasmic	248	260	0.86
Transmembrane Helix	261	283	0.85
Non-Cytoplasmic	284	378	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLGKPTKNV LVVALLVIFQ VCFCQDEVTD DYIGENTTVD YTLYESVCFK KDVRNFKAWF  60
   61 LPLMYSVICF VGLLGNGLVV LTYIYFKRLK TMTDTYLLNL AVADILFLMI LPFWAYSEAK 120
  121 SWIFGAYLCK SIFGIYKLSF FSGMLLLLCI SIDRYVAIVQ AVSAHRHRAR VLLISKLSCI 180
  181 GIWTLAFFLS IPELLYSGLQ KNSGEDTWRC SLVSAQVEAL IAIQVAQMVV GFVLPMLAMS 240
  241 FCYLVIIRTL LQARNFERNK AIKVIIAVVV VFVVFQLPYN GVVLAQTVAN FNITNSSCEA 300
  301 SKQLNIAYDV TYSLASVRCC VNPFLYAFIG VKFRSDLFKL FKDLGCLSQE RLRQWSSCRH 360
  361 VRHTSVSMEA ETTTTFSP