YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHCG_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	66	0.91
Transmembrane Helix	67	82	0.93
Cytoplasmic	83	89	0.69
Transmembrane Helix	90	111	0.87
Non-Cytoplasmic	112	125	0.85
Transmembrane Helix	126	145	0.93
Cytoplasmic	146	151	0.83
Transmembrane Helix	152	174	0.87
Non-Cytoplasmic	175	181	0.84
Transmembrane Helix	182	201	0.94
Cytoplasmic	202	214	0.89
Transmembrane Helix	215	234	0.94
Non-Cytoplasmic	235	250	0.92
Transmembrane Helix	251	272	0.91
Cytoplasmic	273	280	0.86
Transmembrane Helix	281	300	0.91
Non-Cytoplasmic	301	306	0.71
Transmembrane Helix	307	328	0.92
Cytoplasmic	329	340	0.91
Transmembrane Helix	341	362	0.85
Non-Cytoplasmic	363	395	0.60
Transmembrane Helix	396	417	0.94
Cytoplasmic	418	497	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWNTNLRGR LPITCLILQV TMVVLFGVFV RYDIQADAHW WLEKKRKNIS SDVENEFYYR  60
   61 YPSFEDVHAM VFVGFGFLMT YLQRYGFSAV GFNFLLAAFG IQWALLMQGW FHFFEEGHIL 120
  121 LSVENLIQAD FCVASTCVAF GAVLGKISPM QLLIMTFFQV TLFTVNEFIL LNLIEAKDAG 180
  181 GSMTIHTFGA YFGLTVTWIL YRKNLEQSKQ RQSSVYHSDL FAMIGTLFLW IYWPSFNSAS 240
  241 SFHGDTQHRA ALNTYLSLAA SVLTTVAVSS VIHKKGKLDM VHIQNATLAG GVGVGTAAEM 300
  301 MLTPYGALIV GFFCGILSTL GFAYLSPFLE SRLRIQDTCG IHNLHGIPGI IGGIVGAVTA 360
  361 AYSSPDVYGE PGIVHSFGFG GYKADWTKRM QGRSQIFGLL LSLAMALVGG IIVGFILKLP 420
  421 FWGQASDENC FEDAIYWEVP EEVNTVYIPE DLAHKHSTSL VPAIPLVLST PSASIVPPVP 480
  481 PTPPASLATV TSSSLVH