YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGW_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.70
Transmembrane Helix	20	43	0.77
Non-Cytoplasmic	44	60	0.54
Transmembrane Helix	61	95	0.75
Cytoplasmic	96	128	0.94
Transmembrane Helix	129	152	0.83
Non-Cytoplasmic	153	160	0.90
Transmembrane Helix	161	182	0.88
Cytoplasmic	183	201	0.91
Transmembrane Helix	202	223	0.91
Non-Cytoplasmic	224	232	0.88
Transmembrane Helix	233	255	0.89
Cytoplasmic	256	260	0.80
Transmembrane Helix	261	284	0.79
Non-Cytoplasmic	285	304	0.89
Transmembrane Helix	305	326	0.91
Cytoplasmic	327	337	0.84
Transmembrane Helix	338	358	0.91
Non-Cytoplasmic	359	370	0.88
Transmembrane Helix	371	396	0.86
Cytoplasmic	397	445	0.93
Transmembrane Helix	446	464	0.90
Non-Cytoplasmic	465	470	0.76
Transmembrane Helix	471	492	0.93
Cytoplasmic	493	502	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKQLKEAF VSNLSGTSVL EVTQGLCFPA FCILCRGLLI IFSQHLCSFL HTWTTQFFMD  60
   61 FVVLIVPLVI TLTVLSSFIL LENLTVILCG AWLLYQIYHR RTCYAKVPVQ KVFASFLKIS 120
  121 LESEYNPAIT CYRVINSVFT AIAILAVDFP LFPRRFAKTE LYGTGAMDFG VGGFIFGAAM 180
  181 VCPEVRRKYT EGSRFNHLRK SLYSVWPLVF LGMGRLVIIK SIGYQEHSTE YGVHWNFFFT 240
  241 IIVVKLITSL LLIIFPLNKS WIVAISITVL YQLALDFTPL KGIILYGTDG RGTRVGLLNA 300
  301 NREGIISTLG YVAIYMAGVQ TGFYVFKRRA QVRDWIKATC WVFSVAVGFF ISLNIVQVNV 360
  361 EAVSRRMANL AFCLWVVASS LMLLSCLLLS GIVLSFAKFL IKGALVPCSW KLIQSATTNR 420
  421 QSESLIVEAE KNKPSFCLIT ALNRNQLFFF LLSNVATGLI NLTVDTLHTG AFWTLAVLSI 480
  481 YMFANCLVIY VLDLQGKTIK FW