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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DSG4_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWLLFRNIC LLILFMVVLG VNSEFIVEVK ELDIENGTTT WQTVRRQKRE WIKFAAACRE  60
   61 GEDNSKRNPI ARIRSDCEVS QRITYRISGA GIDRPPYGVF TINPRTGEIN ITSVVDREIT 120
  121 PLFLIHCRAL NSRGEDLERP LELRVKVMDV NDNPPVFTQN VYTANIEENS DANALVVKLS 180
  181 ATDADEDNHL NSKIAYKIIS QEPAGAPMFM VNRYTGEVRT MSNFLDREQH SMYNLLVRGS 240
  241 DRDGATDGLS SECDCRIKIL DVNDNFPILE KTSYSASIEE NCLSSELIRL QAIDLDEEGT 300
  301 DNWLAQYSIL SGNDGNWFEI QTDPKTNEGI LKLVKMLDYE QEPNIYLSIG VRNQAEFHHS 360
  361 VASQFQMHST PVRIQVINVR EGPTFRPSSM TFSLRGGMRG DSLMNYVLGT YTAIDMDTGS 420
  421 PATNVRYVIG HDAGSWLKVD SRTGEIQFSR EFDTKSKYIT DGMYAAEILA IDDGSGRTAT 480
  481 GTICIEVPDA NDYCPVIYAE SRSVCTHASS VRIYVNDHSF GAPFTFCVVD ESPDTADIWD 540
  541 IRSINGTSAI LMTEQTLSPG PYQIPILVKD SHNRACELPQ TVLLDACLCD DYHVCLHSST 600
  601 TGIYTGDTIW VTDDMGTVTD DGLRQSNVGL GPAGIGMIIL GLLLLFLSPL LLLMCCCKRR 660
  661 QPEGLGTRFA PVPEGGEGVM QPWRIEGAHP EDRDVSNICV PMTASNTQDR IDSSEIYTNT 720
  721 YAGGGTVEGG VSGVELNTGV GTAAGIAAGG ATGTLRKRSS TIGTLREYQD TGMNMAFLDS 780
  781 YFSEKAYAYA DEDEGRPAND CLLIYDHEGT GSPVGSIGCC SWIVDDLDES YMETLDPKFR 840
  841 TLAEICLDTE IEPFPSHQAC IPISTDLPLL GPNYFVNESS GMTLSEAEFQ AEMAAASEPM 900
  901 IHGDIIVTET YTATDPCVQP TTIVFDSQLP PNVVVTETVM APVYDVQGNI CVPAEIANTH 960
  961 NVYYAERVVA SPGVPDMGNG NIGDTCIGPV MSGGILVGPE IQVTQMMSPD IHISQTTRST1020
 1021 SPMTSQHRVT RYSNIHYSRQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle