YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD276_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGWGGPSV GVSMGTALGV LCLCLTGAVE VQVSEDPVVA LVDTDATLRC SFSPEPGFSL  60
   61 RQLNLIWQLT DTKQLVHSFT EGRDQGSAYA NRTALFPDLL VQGNASLRLQ RVRVTDEGSY 120
  121 TCFVSIQDFD SAAVSLQVAA PYSKPSMTLE PNKDLRPGDM VTITCSSYQG YPEAEVFWKD 180
  181 GQGLPLTGNV TTSQMANERG LFDVHSVLRV VLGANGTYSC LVRNPVLQQD AHGSVTITGQ 240
  241 PMTFPPEALW VTVGLSVCLV ILLVALAFVC WRKIKQSCEE ENAGAEDQDG DGEGSKTALR 300
  301 PLKHSENKED DGQEIA

Type	Start	End	Confidence
Signal Peptide	1	28	0.83
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	247	0.98
Transmembrane Helix	248	270	0.93
Cytoplasmic	271	316	0.98